PhyloCloud PhyloCloud v2.0

PhyloCloud

Upload, annotate, visualise, and share phylogenetic trees — from a single Newick file to genome-scale datasets with hundreds of thousands of leaves. Powered by ETE4 SmartView.

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Collection A Collection B

Manage Trees and Collections

Upload Newick, NHX, or annotated .ete files. Organise trees into named collections for publications or projects. Set public, unlisted, or private access per tree.

Bacteria Archaea Eukaryota Viruses

Visualize

Newick tree visualisation powered by ETE4 SmartView. Build annotation panels with heatmaps, bar plots, PA matrices, domain tracks, taxonomy colouring, and more — all configurable from a live layout editor.

OG OG

Analyze Coming soon

Phylogenetic analysis workflows: annotate clades with Pfam domains, multiple-sequence alignments, taxonomic lineages, and orthology groups. Propagate summaries from leaves to internal nodes automatically.

How to Cite

If you use PhyloCloud in your research, please cite:

PhyloCloud
Deng Z, Botas J, Cantalapiedra CP, Hernández-Plaza A, Burguet-Castell J, Huerta-Cepas J. PhyloCloud: an online platform for making sense of phylogenomic data. Nucleic Acids Res. 2022 Jul 5;50(W1):W577–W582.
doi:10.1093/nar/gkac324  · PMID: 35544233
ETE toolkit — tree visualisation engine
Huerta-Cepas J, Serra F, Bork P. ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data. Mol Biol Evol. 2016 Jun;33(6):1635–1638.
doi:10.1093/molbev/msw046  · PMID: 26921390  ·  github.com/etetoolkit/ete

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